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GoPubMed Proteins lists recent and important papers and reviews for proteins. Page last changed on 19 Dec 2016.

Angiomotin-like 2

Top mentioned proteins: fibrillin-1, CAN, ToF, ACID, Trypsin
Papers on Mascot
Rapid Detection of Proteins in Transgenic Crops without Protein Reference Standards by Targeted Proteomic Mass Spectrometry.
Hu et al., Hayward, United States. In J Sci Food Agric, Feb 2016
The multiple reaction monitoring-initiated detection and sequencing (MIDAS) approach was used for initial peptide/protein identification via Mascot database search.
Proteomics screening of adenosine triphosphate-interacting proteins in the liver of diazinon-treated rats.
Abnous et al., Mashhad, Iran. In Hum Exp Toxicol, Jan 2016
Deferentially expressed proteins were cut and identified using matrix-assisted laser desorption/ionization/time-of-flight and Mascot database.
Rescuing discarded spectra: Full comprehensive analysis of a minimal proteome.
Serrano et al., Barcelona, Spain. In Proteomics, Jan 2016
An initial search with both Mascot and a species-specific NCBInr database with common contaminants (NCBImpn), resulted in around 79% of the acquired spectra not having an assignment.
Comparative Proteomic, Physiological, Morphological and Biochemical Analyses Reveal the Characteristics of the Diploid Spermatozoa of Allotetraploid Hybrids of Carassius auratus and Common Carp (Cyprinus carpio).
Liu et al., In Biol Reprod, Jan 2016
As common carp and the allotetraploid hybrids are not fully sequenced organisms, we identified proteins by Mascot searching against the NCBI nr protein database for the zebrafish (Danio rerio), and verified them against predicted homologous proteins derived from transcriptomes of the testis.
Association of Levels of Opioid Use with Pain and Activity Interference among Patients Initiating Chronic Opioid Therapy: A Longitudinal Study.
Von Korff et al., Seattle, United States. In Pain, Jan 2016
In the Middle-Aged/Seniors Chronic Opioid Therapy (MASCOT) study of patients identified through electronic pharmacy records as initiating COT for CNCP, we examined the relationships between level of opioid use (over the 120 days prior to outcome assessment) and pain and activity interference outcomes at 4- and 12-month follow-ups.
Milk protein profiles in response to Streptococcus agalactiae subclinical mastitis in dairy cows.
Roytrakul et al., Khon Kaen, Thailand. In Anim Sci J, Jan 2016
Following Mascot database matching, 11 and 12 protein types were identified in the milk collected from healthy and S. agalactiae subclinical mastitic udders, respectively.
Mapping the use of research to support strategies tackling maternal and child health inequities: evidence from six countries in Africa and Latin America.
Muñoz et al., Cuernavaca, Mexico. In Health Res Policy Syst, Dec 2015
BACKGROUND: Striving to foster collaboration among countries suffering from maternal and child health (MCH) inequities, the MASCOT project mapped and analyzed the use of research in strategies tackling them in 11 low- and middle-income countries.
Identification of new phosphorylation sites of AMPA receptors in the rat hippocampus--A resource for neuroscience research.
Lubec et al., Vienna, Austria. In Proteomics Clin Appl, Oct 2015
RESULTS: Using Mascot as a search engine, phosphorylation sites S506, S645, S720, S849, S863, S895, T858, Y228, Y419, and T734 were found on GluA1; S357, S513, S656, S727, T243, T420, T741, Y 143, Y301,Y426 on GluA2; S301, S516, S657, S732, T222, and T746 were observed on GluA3; and S514, S653 was phosphorylated on GluA4.
Quantitative assessment of the cell surface proteome to identify novel therapeutic targets in cholangiocarcinoma.
Afford et al., Birmingham, United Kingdom. In Lancet, Mar 2015
After isolation, trypsin digestion, and purification, peptides were fractionated for tandem mass spectrometry before being analysed with the NCBInr database and the Mascot search algorithm.
Community-based interventions for improving maternal health and for reducing maternal health inequalities in high-income countries: a systematic map of research.
Becerril et al., Genève, Switzerland. In Global Health, 2014
BACKGROUND: This review is part of a European Commission project, MASCOT, aimed at reducing maternal and child health inequalities.
Computer applications making rapid advances in high throughput microbial proteomics (HTMP).
Wu et al., Kao-hsiung, Taiwan. In Comb Chem High Throughput Screen, 2014
This current review considers: 1) software tools for identifying the proteome, such as MASCOT or PDQuest, 2) online databases of proteomes, such as SWISS-PROT, Proteome Web, or the Proteomics Facility of the Pathogen Functional Genomics Resource Center, and 3) software tools for applying proteomic data, such as PSI-BLAST or VESPA.
A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics.
Kuster et al., Freising, Germany. In Nat Biotechnol, 2013
Analysis of the library by mass spectrometry yielded a data set that we used to evaluate the merits of different search engines (Mascot and Andromeda) and fragmentation methods (beam-type collision-induced dissociation (HCD) and electron transfer dissociation (ETD)) for peptide identification.
Angiomotin-like2 gene (amotl2) is required for migration and proliferation of endothelial cells during angiogenesis.
Meng et al., Beijing, China. In J Biol Chem, 2011
Amotl2 plays a pivotal role in polarity, migration and proliferation of angiogenic endothelial cells
Modes of inference for evaluating the confidence of peptide identifications.
McIntosh et al., Seattle, United States. In J Proteome Res, 2008
Several modes of inference are currently used in practice to evaluate the confidence of putative peptide identifications resulting from database scoring algorithms such as Mascot, SEQUEST, or X!Tandem.
Molecular characterization of angiomotin/JEAP family proteins: interaction with MUPP1/Patj and their endogenous properties.
Tsukita et al., Kyoto, Japan. In Genes Cells, 2007
Data show that MUPP1 interacts with angiomotin (Amot), JEAP/Amot-like 1 and MASCOT/Amot-like 2, and that all the Amot/JEAP family proteins also interacted with Patj, a close relative of MUPP1.
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations.
Gygi et al., Boston, United States. In Nat Methods, 2005
Acquired MS/MS spectra were interpreted with Mascot and SEQUEST algorithms with and without the requirement that all returned peptides be tryptic.
Searching for hypothetical proteins: theory and practice based upon original data and literature.
John et al., Vienna, Austria. In Prog Neurobiol, 2005
Mascot or ProFound.
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